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The genetic history around the southeastern Mongolian Plateau traces Neolithic cultural diffusions in northern East Asia

PRJCA039072 Original Paper / DOI2026-01-0535 samples (study)

AI interpretationAI-generated

Ancient DNA from 35 genomes reveals 3,800 years of genetic continuity and cultural exchange on the southeastern Mongolian Plateau.

Researchers sequenced 35 ancient genomes from the southeastern Mongolian Plateau, dating from 8,800 to 5,000 years ago. They found that early Holocene populations shared a common ancestry that persisted for thousands of years. This ancestry, linked to post-LGM microblade dispersals, later influenced Hongshan culture populations in the West Liao River basin. Between 5,700 and 5,000 years ago, this continuity was disrupted by gene flow from the northeastern Mongolian Plateau and Hongshan groups, coinciding with cultural diffusion.

Sample interpretation

The study analyzed 35 ancient individuals from the southeastern Mongolian Plateau. Y-chromosome haplogroups were resolved for 22 males, with N-CTS6128 and N-M46 being most common (5 each), followed by C-BY59164, N-B482, C-SK1032 (2 each), and O-P164, C-CTS2, C-M217 (1 each). Mitochondrial DNA showed R11 as the most frequent (9), then D4 and G2a-T152C! (4 each), A-a (2), and G2a1, B5b2c (1 each). Most samples came from the Zhengjiagou site.

For genealogy enthusiasts

This study shows that ancient populations in the southeastern Mongolian Plateau were not isolated but engaged in complex genetic and cultural exchanges. For ancestry enthusiasts, it highlights how migrations and cultural diffusion shaped northern East Asian populations, and provides a deep-time context for Y and mtDNA lineages like N and R11 in the region.

Abstract

Cultural and material exchange between groups across the mountainous region separating the East Asian Steppe and the plains and river valleys of northern East Asia has been documented since the Paleolithic, yet the extent to which these interactions reflect prehistoric population dynamics is unknown. By sequencing and analyzing 35 ancient genomes from the southeastern Mongolian Plateau, spanning from 8,800 to 5,000 years ago, we found that Early Holocene populations from the southeastern Mongolian Plateau shared a common ancestry. We show this ancestry, which was predominant in steppe populations before the Holocene and may have been associated with the post-Last Glacial Maximum (LGM) microblade dispersal, to have lasted on the southeastern Mongolian Plateau until between 7,500 and 5,700 years ago, during which time it contributed to the West Liao River basin populations associated with the Hongshan culture. The continuity of the Early Holocene southeastern Mongolian Plateau ancestry was later disrupted by genetic influxes from both the northeastern Mongolian Plateau and West Liao River Hongshan populations, coinciding with cultural diffusion between 5,700 and 5,000 years ago. These revealed complex genetic and cultural interactions along the Eastern Steppe in the period between the LGM and the Middle Holocene.

Samples & Data on TheYtree

35samples on site
22Y haplogroup resolved

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
N-CTS6128 5
N-M46 5
C-BY59164 2
N-B482 2
C-SK1032 2
C-F978 1
N-Y109387 1
N-Z4762 1
O-P164 1
C-CTS2 1
C-M217 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
XinglongT1005M1 N-B482 F1b1-a · 8800-5000 BP
Sitai2 N-M46 C4a2 · 8800-5000 BP
XinglongT0907F11_West1 N-M46 R · 8800-5000 BP
XinglongT0907F11_West2 N-M46 G2a-T152C! · 8800-5000 BP
XinglongT0906M3_Central N-CTS6128 D4 · 8800-5000 BP
XinglongT0906M3_West N-CTS6128 R11 · 8800-5000 BP
XinglongT0906F3_3 N-CTS6128 R11 · 8800-5000 BP
XinglongT0806M5 N-B482 D4j · 8800-5000 BP
Sitai1 N-M46 R11 · 8800-5000 BP
Sitai3 N-Z4762 R11 · 8800-5000 BP