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Entwined African and Asian genetic roots of medieval peoples of the Swahili coast

PRJEB58698 Original Paper / DOI2023-03-2980 samples (study)

AI interpretationAI-generated

Ancient DNA reveals how African and Asian roots intertwined on the medieval Swahili coast.

This study analyzed ancient DNA from 80 individuals who lived in Swahili coastal and inland towns between 1250 and 1800 AD. Many coastal individuals had over half African ancestry, mainly from female ancestors, plus a large Asian component. About 80–90% of that Asian DNA came from Persian men. Mixing began around 1000 AD, coinciding with Islam's spread. Before 1500 AD, Asian ancestry was mostly Persian-related; afterward, it became more Arabian. Later interactions further changed the ancestry of today's Swahili coast people.

Sample interpretation

The dataset includes 82 ancient individuals from six coastal towns and one inland town, with 28 Y-chromosome haplogroups resolved. The largest site sample is I24975 (n=48), followed by I17405 (n=13) and I7943 (n=8). Y haplogroups include E-V43, J-CTS463, J-Z28162, E-FGC39408, and E-Z1788 (each n=2). Mitochondrial haplogroups are predominantly African, led by L3e3a (n=8), L0a2a2a (n=6), and L3d1a1a (n=6), reflecting the strong female African contribution.

For genealogy enthusiasts

For ancestry enthusiasts, this study shows that the Swahili coast was a true genetic crossroads: African maternal lines met Persian paternal lines around 1000 AD, later joined by Arabian influences. It highlights how trade, religion, and migration shaped one of Africa's most cosmopolitan medieval societies.

Abstract

The urban peoples of the Swahili coast traded across eastern Africa and the Indian Ocean and were among the first practitioners of Islam among sub-Saharan people1,2. The extent to which these early interactions between Africans and non-Africans were accompanied by genetic exchange remains unknown. Here we report ancient DNA data for 80 individuals from 6 medieval and early modern (ad 1250–1800) coastal towns and an inland town after ad 1650. More than half of the DNA of many of the individuals from coastal towns originates from primarily female ancestors from Africa, with a large proportion—and occasionally more than half—of the DNA coming from Asian ancestors. The Asian ancestry includes components associated with Persia and India, with 80–90% of the Asian DNA originating from Persian men. Peoples of African and Asian origins began to mix by about ad 1000, coinciding with the large-scale adoption of Islam. Before about ad 1500, the Southwest Asian ancestry was mainly Persian-related, consistent with the narrative of the Kilwa Chronicle, the oldest history told by people of the Swahili coast3. After this time, the sources of DNA became increasingly Arabian, consistent with evidence of growing interactions with southern Arabia4. Subsequent interactions with Asian and African people further changed the ancestry of present-day people of the Swahili coast in relation to the medieval individuals whose DNA we sequenced.

Samples & Data on TheYtree

82samples on site
28Y haplogroup resolved
8archaeological sites

Sample Map

Map tiles by TheYtree · dot size = number of samples

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
E-V43 2
J-CTS463 2
J-Z28162 2
E-FGC39408 2
E-Z1788 2
E-Y47604 1
J-Y15152 1
E-M2 1
J-Y25795 1
J-CTS2251 1
E-M215 1
J-Z2432 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
I19401 J-Z28162 L0a2a2a Kenya_Mtwapa_Swahili· 1500-1700 CE
I19417 J-CTS463 L3e3a Kenya_Mtwapa_Swahili· 1524-1659 calCE
I7942 J-Z2432 L2d1a
I8816 J-Y25795 L2a1h
I7944 E-Y47604 L3a1b · 1516-1667 calCE
I13872 E-Z1788 L4b2a1 Kenya_Makwasinyi_Swahili· 1400-1700 CE
I13873 E-Z1788 L2a1-a Kenya_Makwasinyi_Swahili_father.I13872.brother.I13875· 1400-1700 CE
I13875 E-FGC39408 L2a1-a Kenya_Makwasinyi_Swahili· 1400-1700 CE
I13876 E L3e3a Kenya_Makwasinyi_Swahili_lc· 1400-1700 CE
I14001 E-BY53757 L0a1a2 Tanzania_Lindi_Swahili· 1511-1664 calCE