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Genomic study of plague victims in France in the 17th and 18th centuries

PRJEB65913 2026-01-0171 samples (study)

AI interpretationAI-generated

Ancient DNA from 79 French plague victims reveals their ancestry and disease susceptibility.

This study sequenced 79 genomes from 17th-18th century plague victims in France, linked to the Thirty Years War and the 1720-1722 Marseille epidemic. DNA came from well-preserved petrous bones, yielding coverage of 0.1 to 5.5-fold. The data offer a rare look at the genetic makeup of people who died in these outbreaks, helping researchers explore whether certain genetic traits made individuals more vulnerable to plague.

Sample interpretation

Of 71 site samples, 35 had resolved Y-chromosome lineages. The most common Y haplogroup was R-M269 (7 samples), followed by R-Z2110 and R-PF6538 (2 each). Other lineages included R-FGC35835, R-M167, R-P312, R-S20321, and E-M81 (1 each). Mitochondrial DNA was dominated by HV6 (4 samples), then T1a1, H2a, and H2a2a (3 each), with H27 and V (2 each). These results show a mix of western European paternal and maternal lineages.

For genealogy enthusiasts

For ancestry enthusiasts, this study adds a rare ancient DNA dataset from 17th-18th century France. The Y and mtDNA lineages reflect typical western European diversity, offering context for tracing regional ancestry and understanding how past epidemics may have shaped genetic variation.

Abstract

In this study, we conducted paleogenomic analysis on historical human skeletons excavated from archaeological contexts in France, specifically associated with the plague epidemics of the 17th and 18th centuries. These archaeological sites are linked to significant historical events, including the Thirty Years War in the 17th century and the devastating Marseille plague epidemic of 1720-1722. Our research focused on the sequencing of genomes extracted from individuals who succumbed to these epidemics, aiming to uncover insights into their genetic ancestry and explore potential genetic factors contributing to their susceptibility to the disease. Remarkably well-preserved petrous bones were the source of DNA for genome sequencing, enabling the characterization of nearly complete genetic profiles. In total, we successfully sequenced 79 human genomes, each with a depth-of-coverage comprised between 0.1-to-5.5-fold. These genomic data provided valuable insights into the genetic makeup of individuals who were most commonly affected during these historical plague outbreaks. Our findings shed light on the genetic aspects of historical plague victims, furthering our understanding of the impact of genetics on susceptibility to these devastating epidemics.

Samples & Data on TheYtree

71samples on site
35Y haplogroup resolved

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
R-M269 7
R-Z2110 2
R-PF6538 2
R-S20321 1
E-M81 1
R-TY528559 1
R1 1
R-A11005 1
R-Y5046 1
E-V13 1
R-FGC24396 1
G-Z726 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
AMIENS133p G-Z726 U4b1a2 · the 17th and 18th centuries
AMIENS134p R-Z2110 — · the 17th and 18th centuries
AMIENS148p R-S20321 U4c1 · the 17th and 18th centuries
AMIENS177p R-L1446 H55b · the 17th and 18th centuries
AMIENS32p R-P310 U6a1a1 · the 17th and 18th centuries
AMIENS46p R-M269 I1a1 · the 17th and 18th centuries
AMIENS91p R-Z2110 H27 · the 17th and 18th centuries
DEL25p R-M269 — · the 17th and 18th centuries
DEL36p R-M269 H2a2a · the 17th and 18th centuries
LAR10p R-Y23252 HV6 · the 17th and 18th centuries