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Ancient DNA indicates 3,000 years of genetic continuity in the Northern Iranian Plateau, from the Copper Age to the Sassanid Empire

PRJEB81975 Original Paper / DOI2025-05-1350 samples (study)

AI interpretationAI-generated

Ancient DNA reveals 3,000 years of genetic continuity in northern Iran, from Copper Age to Sassanid Empire.

This study analyzed 50 ancient samples from nine Iranian sites, spanning 4700 BCE to 1300 CE, including 23 mitogenomes and 13 nuclear genomes. A key Early Chalcolithic sample showed mostly Early Neolithic Iranian ancestry, indicating long-term continuity in the Zagros region with some western influence. Historical samples from the Achaemenid, Parthian, and Sassanid periods were genetically intermediate on an east-west cline across the Persian Plateau, with strong ties to Bronze Age populations in South-Central Asia. Uniparental lineages suggest population stability from prehistory to modern times.

Sample interpretation

The study reports 23 mitogenomes and 13 nuclear genomes from 50 samples across nine sites. Y-chromosome haplogroups are resolved for 9 males, mostly J subclades (J-FGC6077, J-FGC6031, J-Y28253, etc.) and one R-SK522. Mitochondrial haplogroups include J1b6a, J1d, H13a2b3, HV, HV2a1, and U4c1. Cultural periods represented: Parthian (7), Achaemenid/Seleucid (6), End Parthian/Middle Sassanid (5), Medieval (3), Bakun (1), Late Bronze Age (1). Site sample counts: 2100BP (7), IRN69 (6), IRN77 (5), IRN85 (3), IRN80 (1), IRN24 (1).

For genealogy enthusiasts

For ancestry enthusiasts, this study confirms that northern Iran has been a stable genetic crossroads for millennia, with continuous local ancestry since the Neolithic and enduring links to South-Central Asia. It highlights the Persian Plateau as a key region for understanding ancient Eurasian population dynamics.

Abstract

In this study, we present new ancient DNA data from prehistoric and historic populations of the Iranian Plateau. By analysing 50 samples from nine archaeological sites across Iran, we report 23 newly sequenced mitogenomes and 13 nuclear genomes, spanning 4700 BCE to 1300 CE. We integrate an extensive reference sample set of previously published ancient DNA datasets from Western and South-Central Asia, enhancing our understanding of genetic continuity and diversity within ancient Iranian populations. A new Early Chalcolithic sample, predating all other Chalcolithic genomes from Iran, demonstrates mostly Early Neolithic Iranian genetic ancestry. This finding reflects long-term cultural and biological continuity in and around the Zagros area, alongside evidence of some western genetic influence. Our sample selection prioritizes northern Iran, with a particular focus on the Achaemenid, Parthian, and Sassanid periods (355 BCE–460 CE). The genetic profiles of historical samples from this region position them as intermediates on an east-west genetic cline across the Persian Plateau. They also exhibit strong connections to local and South-Central Asian Bronze Age populations, underscoring enduring genetic connections across these regions. Diachronic analyses of uniparental lineages on the Iranian Plateau further highlight population stability from prehistoric to modern times.

Samples & Data on TheYtree

23samples on site
9Y haplogroup resolved

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
J-FGC6077 1
J-FGC6031 1
J-Y28253 1
J-FGC6018 1
J-M12 1
J-L25 1
J-Y28235 1
R-L51 1
R-SK522 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
IRN34 J-L25 U1a1c1c Iran_Parthian_empire· 2100 BP
IRN23 J-FGC6018 J1d Iran_Parthian_empire· 2100 BP
IRN25 J-FGC6031 J1d Iran_Parthian_empire· 2100 BP
IRN31 J-FGC6077 J1b6a Iran_Parthian_empire· 1950 BP
IRN24 R-SK522 T2c Iran_Bakun_period· 6635 BP
IRN61 R-L51 K1a4 Iran_Achaemenid_ Selecuid· 2267 BP
IRN65 J-Y28235 U1a1c1d Iran_Achaemenid_ Selecuid· 2267 BP
IRN68 J-M12 HV Iran_Achaemenid_ Selecuid· 2267 BP
IRN69 J-Y28253 J1d4 Iran_Achaemenid_ Selecuid· 2310 BP