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Genomic insights into the Iron Age Saka of Boz-Barmak, Kyrgyzstan

PRJEB97627 Original Paper / DOI2026-07-2012 samples (study)

AI interpretationAI-generated

Ancient DNA from Kyrgyzstan's Saka reveals patrilocal society with stable male lineages and diverse female ancestry.

This study analyzes 12 individuals from the Boz-Barmak burial site in Kyrgyzstan, linked to Iron Age Saka pastoralists (4th-2nd century BCE). Genetic clustering places them within ancient and modern Central Eurasian and Siberian variation. Kinship analysis found no first-degree relatives but a network of second- and third-degree relationships. All males share one Y-chromosome haplotype, common in present-day Kyrgyz and Tajiks, while mitochondrial DNA is diverse. This matches archaeological evidence of patrilocality, where men stayed and women moved, boosting genetic diversity.

Sample interpretation

The site has 25 samples, with 15 Y-chromosomes resolved. Ten samples are culturally Saka. Y-haplogroups are all R1a subclades, including R-S23592 (4), R-M417 (3), R-Z2124 (2), R-FTA20712 (2), and others. Mitochondrial haplogroups are diverse: U2e2, HV6, C4a1a3, U4b1a4, K2a5b, and U5a1a1 each appear 3 times. This sample set supports the study's conclusions on male homogeneity and female diversity.

For genealogy enthusiasts

For ancestry enthusiasts, this study shows how ancient DNA can reveal social structure. The Saka practiced patrilocality, meaning paternal lines stayed put while women moved in. If you carry R1a or these mtDNA lineages, you may share deep roots with Central Asian nomads. It also highlights that genetic diversity can come from female mobility, not just migration.

Abstract

The nomadic cultures of the Iron Age played an important role in shaping the genetic and cultural landscape of Eurasian populations. Yet despite its key geographical location, the Central Eurasian region remains underrepresented in ancient DNA studies of humans. We address this gap through genomic analysis of 12 individuals from the Boz-Barmak burial site in Kyrgyzstan associated with Saka pastoralists (4th−2nd centuries BCE), 9 of which yielded low-coverage genomes (on average 0.7-fold coverage). Genetic clustering analysis placed these individuals within the genetic variation of ancient and modern Central Eurasian and Siberian populations. We found no evidence of first-degree relatives in a kinship analysis, however a network of second- and third-degree relationships seems to be present. Notably, all male individuals share the same Y-chromosomal haplotype, common in present-day Kyrgyz groups, while mitochondrial DNA showed comparably high diversity, with distinct haplogroups observed across the analysed individuals. These findings are in line with archaeological and ethnographic evidence of patrilocality in Early Iron Age Saka, where male lineages remained stable across generations, while female mobility contributed to genetic diversity. Our study complements our understanding of the interplay between kinship, social organisation and population history in nomadic cultures.

Samples & Data on TheYtree

25samples on site
15Y haplogroup resolved
2archaeological sites

Sample Map

Map tiles by TheYtree · dot size = number of samples

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
R-S23592 4
R-M417 3
R-Z2124 2
R-FTA20712 2
R-FGC82884 1
R-BY90688 1
R-YP1558 1
R-M198 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
2700_deep R-S23592 HV6
2701_capture R-M417 U2e2
2705_capture R-M198 U2e2a1d
2701_deep R-M417 U5a1b1
2702_deep R-YP1558 U2e2
2705_deep R-S23592 K2a5b
2706_deep R-S23592 U2e2a1d
2696_deep R-FTA20712 U5a1a1
BB.K.1 R-BY90688 C4a1a3 Saka· 4th–2nd c. BCE
BB.K.6 R-Z2124 HV6 Saka· 4th–2nd c. BCE