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Paleogenomics retraces the ancient population history of Southwestern East Asia for the past 12 000 years

PRJCA044389 Original Paper / DOI2026-09-2136 samples (study)

AI interpretationAI-generated

Ancient DNA reveals 12,000 years of complex population history in Guizhou, southwestern East Asia.

This study presents the first ancient genomes from Guizhou, including five individuals older than 10,000 years. It shows that Paleolithic people in southwestern East Asia carried a mix of basal East Asian ancestry (Xingyi_EN) and northern East Asian ancestry, with varied distribution. By the Bronze Age, this basal ancestry disappeared. From 1,200 years ago, genetic interactions between Guizhou and Guangxi increased, following language-related patterns.

Sample interpretation

The dataset includes 36 ancient individuals from Guizhou, spanning the Neolithic to Ming dynasty. Y-chromosome haplogroups are dominated by O lineages (e.g., O-F26366, O-F15848), with minor D and C. Mitochondrial DNA is diverse, with B5a1c most frequent, followed by F1-a, B4a5, M74a, M71, and F2b1. These genetic profiles reflect long-term continuity and interactions in the region.

For genealogy enthusiasts

For ancestry enthusiasts, this study highlights Guizhou as a key region for understanding ancient human migrations in East Asia. It shows that basal East Asian ancestry once present in the Paleolithic later vanished, and that recent genetic interactions follow linguistic boundaries, offering a deeper context for interpreting your own DNA results.

Abstract

Southwestern East Asia, a key intersection linking southern East Asia, Southeast Asia, and the Tibetan Plateau, is a crucial area for the study of early human migrations. However, ancient DNA studies in the eastern part of the region, particularly in Guizhou, are still lacking. We present the first genomic study of Guizhou populations from a time period spanning 12 000 years, including five Guizhou individuals older than 10 000 years. Combined with published Guangxi and Yunnan samples, we reveal a complex genetic history of human populations in southwestern East Asia from the Paleolithic to the Early Neolithic periods. Paleolithic populations were marked by heterogeneous distribution patterns of the recently described basal East Asian Xingyi_EN ancestry admixed with ancestry present in northern East Asia. By the Bronze Age, this enigmatic basal ancestry was no longer detectable in the region. Beginning 1200 years ago, genetic interactions between Guizhou and Guangxi populations intensified following language-specific patterns. Overall, our results clarify the complex population dynamics of southwestern East Asia over the past 12 000 years.

Samples & Data on TheYtree

36samples on site
20Y haplogroup resolved

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
O-F26366 4
O-F15848 3
O-TY529518 2
O-N5 2
O-TYT150125 2
D-F1070 1
C-M217 1
O-F20560 1
K-M2335 1
O-Z25928 1
NO 1
O-P164 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
ZG1 O-TY529518 F1-a 新石器时代 Neolithic· 11000-10000 BP
ZG3 O-TY529518 F1-a 新石器时代 Neolithic· 11000-10000 BP
NPD1 K-M2335 F1-a 新石器时代 Neolithic· 11688-11264 BP
NPD2 C-M217 M71-a 新石器时代 Neolithic· 11688-11264 BP
CD2 O-P164 F2b1 青铜时代 Bronze Age· 4000-2000 BP
CD4 O-Z25928 F2b1 青铜时代 Bronze Age· 4000-2000 BP
GCD2 O-F26366 B5a1c 唐—宋代 Tang–Song· 1190-913 BP
GCD3 O-F26366 B5a1c 唐—宋代 Tang–Song· 1190-913 BP
XRQ1 O-N5 B4c2c 明代 Ming· 646-548 BP
XRQ3 O-F15848 B4a5 明代 Ming· 646-548 BP