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Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation

PRJEB27215 Original Paper / DOI22 samples (study)

AI interpretationAI-generated

Peqi'in Cave ancient DNA shows Chalcolithic culture arose from population mixture.

This study analyzed 22 individuals from Peqi'in Cave in Israel, dating to the Late Chalcolithic (4500–3900 BCE). They formed a homogeneous population with mixed ancestry: about 57% from local Levant Neolithic groups, 17% from Iran Chalcolithic-related groups, and 26% from Anatolian Neolithic-related groups. This suggests that migration and mixing of peoples likely drove the cultural changes seen in the southern Levant during this period.

Sample interpretation

All 22 individuals were from Peqi'in Cave, Israel, and culturally associated with the Late Chalcolithic period. Y-chromosome haplogroups were resolved for 10 males, dominated by T lineages (T-Y4119, T-L208, T-CTS2214, T-L162) plus one E-M123. Mitochondrial DNA included J2a2d, T2e, R0a, K1a-C150T, T1, and I6. This genetic profile reflects a mix of Near Eastern ancestries, consistent with the modeled population mixture.

For genealogy enthusiasts

For ancestry enthusiasts, this study shows that ancient DNA can reveal how population mixing shaped cultural shifts. It highlights the complex ancestry of Levantine Chalcolithic people, with contributions from local, Iranian, and Anatolian Neolithic sources, and warns against assuming direct descent to later groups.

Abstract

The material culture of the Late Chalcolithic period in the southern Levant (4500–3900/3800 BCE) is qualitatively distinct from previous and subsequent periods. Here, to test the hypothesis that the advent and decline of this culture was influenced by movements of people, we generated genome-wide ancient DNA from 22 individuals from Peqi’in Cave, Israel. These individuals were part of a homogeneous population that can be modeled as deriving ~57% of its ancestry from groups related to those of the local Levant Neolithic, ~17% from groups related to those of the Iran Chalcolithic, and ~26% from groups related to those of the Anatolian Neolithic. The Peqi’in population also appears to have contributed differently to later Bronze Age groups, one of which we show cannot plausibly have descended from the same population as that of Peqi’in Cave. These results provide an example of how population movements propelled cultural changes in the deep past.

Samples & Data on TheYtree

22samples on site
10Y haplogroup resolved

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
T-L208 3
T-Y4119 3
T-CTS2214 2
T-L162 1
E-M123 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
I1160 T-CTS2214 I6a Late Chalcolithic· 4500–3800 BCE
I1178 T-Y4119 I6 Late Chalcolithic· 4500–3800 BCE
I1171 E-M123 K1a-C150T Late Chalcolithic· 4500–3800 BCE
I1155 T-L208 K1a-C150T Late Chalcolithic· 4500–3800 BCE
I1165 T-CTS2214 HV1a'b'c Late Chalcolithic· 4500–3800 BCE
I1166 T-Y4119 R0a Late Chalcolithic· 4500–3800 BCE
I1170 T-Y4119 T1a2 Late Chalcolithic· 4500–3800 BCE
I1172 T-L208 K1a18 Late Chalcolithic· 4500–3800 BCE
I1180 T-L208 T2-C150T Late Chalcolithic· 4500–3800 BCE
I1187 T-L162 N1b Late Chalcolithic· 4500–3800 BCE