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The genetic history of Portugal over the past 5,000 years

PRJNA1248585 Original Paper / DOI2025-06-2996 samples (study)

AI interpretationAI-generated

67 ancient Portuguese genomes trace 5,000 years of migration and local continuity.

This study analyzes 67 ancient individuals from Portugal, spanning the Neolithic to the 19th century. It reveals early mixing between local hunter-gatherers and Anatolian farmers, a north-south gradient in Magdalenian ancestry, and the first appearance of Steppe ancestry during the Bell Beaker period. Roman Idanha-a-Velha was a diverse hub with North African and Eastern Mediterranean influences. Medieval times saw Central European, African, and Mediterranean admixtures, with lasting African ancestry in southern Portugal.

Sample interpretation

The site samples include 44 individuals, with 21 resolved Y-haplogroups. The most common Y-haplogroup is R-M269 (2 samples), followed by several singletons like E-CTS4231, R-PF2462, J-S18910, and I-L160. Mitochondrial DNA shows H1 (4 samples) and H6a1b2 (3 samples) as most frequent, plus T2b19b, H1a, H1a1, and L1b1a2. These lineages reflect a mix of European, Near Eastern, and African origins, consistent with the paper's findings of diverse migrations.

For genealogy enthusiasts

For ancestry enthusiasts, this study highlights Portugal as a crossroads of ancient migrations, with local continuity and dynamic admixture. It shows how genetic data can trace historical events like Roman and Islamic influences, enriching our understanding of Iberian heritage.

Abstract

Background: Recent ancient DNA studies uncovering large-scale demographic events in Iberia have presented very limited data for Portugal, a country located at the westernmost edge of continental Eurasia. Here, we present the most comprehensive collection of Portuguese ancient genome-wide data, from 67 individuals spanning 5,000 years of human history, from the Neolithic to the 19th century. Results: We identify early admixture between local hunter-gatherers and Anatolian-related farmers in Neolithic Portugal, with a north-south gradient of Magdalenian ancestry persistence. This profile continues into the Chalcolithic, though Bell Beaker-associated sites reveal Portugal's first evidence of Steppe-related ancestry. Such ancestry has a broader demographic impact during the Bronze Age, despite continuity of local Chalcolithic genetic ancestry and limited Mediterranean connections. The village of Idanha-a-Velha emerges as a major Roman migration and interaction hub, presenting a notably diverse genetic profile that includes north African and eastern Mediterranean ancestries. The Early Medieval period is marked by the arrival of Central European genetic diversity, likely linked to migrations of Germanic tribes, adding to coeval local, African, and Mediterranean influences. The Islamic and Christian Conquest periods show strong genetic continuity in northern Portugal and significant additional African admixture in the south. The latter remains stable during the post-Islamic period, suggesting enduring African influences. Conclusions: We reveal dynamic patterns of migration in line with cultural exchange across millennia, but also the persistence of local ancestries. Our findings integrate genetic information with historical and archaeological data, enhancing our understanding of Iberia's biological and cultural heritage.

Samples & Data on TheYtree

44samples on site
21Y haplogroup resolved
11archaeological sites

Sample Map

Map tiles by TheYtree · dot size = number of samples

Paternal (Y-DNA) Haplogroups

HaplogroupSamples
R-M269 2
R-Y22972 1
E-M81 1
J-L558 1
R-Y2414 1
I-FT25845 1
R-Y5142 1
R-SK2109 1
R-DF96 1
E-CTS4231 1
R-PF2462 1
J-S18910 1

Maternal (mtDNA) Haplogroups

Sample Highlights More samples →

SampleY-DNAmtDNACulture / Period
PT_22218 E-Y141317 W1-T119C · 13-14th century
PT_24170 J-ZS4408 — · 8th - 10th century
PT_23226 J-S18910 H6a1b2 · 13-14th century
PT_22179 R-DF96 T1a1k · 19th century Post-medieval (Napoleonic)
PT_22183 I-FT25845 L2b3a · 19th century Post-medieval (Napoleonic)
PT_22190 E-M81 H1 · 18th century
PT_22194 I-AMM076 T2b3 · Mid-Neolithic
PT_22197 I-L160 U5b1i · Chalcolithic
PT_23223 R-M269 H6a1b2 · 13-14th century
PT_23241 E-CTS4231 H1q · 18th century